Clustering Workflow

Cluster and Reduce Dimensions of a object

Usage

clustering_workflow(
  object,
  excluded_cells,
  resolution = seq(0.2, 1, by = 0.2),
  organism = "human",
  experiment_name = "default_experiment",
  ...
)

Arguments

object

a SingleCellExperiment object

excluded_cells

named list of cells to exclude

resolution

resolution(s) to use for clustering cells

organism

Organism

experiment_name

name of the experiment

...

extra args passed to sce_process

Value

a clustered SingleCellExperiment object