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Get feature names

Usage

get_features(object, experiment = "gene")

Arguments

object

a SingleCellExperiment object

experiment

"gene" or "transcript"

Value

variable features from a SingleCellExperiment object

Examples


data(small_example_dataset)
get_features(small_example_dataset)
#>    [1] "Gene_0001" "Gene_0002" "Gene_0003" "Gene_0004" "Gene_0005" "Gene_0006"
#>    [7] "Gene_0007" "Gene_0008" "Gene_0009" "Gene_0010" "Gene_0011" "Gene_0012"
#>   [13] "Gene_0013" "Gene_0014" "Gene_0015" "Gene_0016" "Gene_0017" "Gene_0018"
#>   [19] "Gene_0019" "Gene_0020" "Gene_0021" "Gene_0022" "Gene_0023" "Gene_0024"
#>   [25] "Gene_0025" "Gene_0026" "Gene_0027" "Gene_0028" "Gene_0029" "Gene_0030"
#>   [31] "Gene_0031" "Gene_0032" "Gene_0033" "Gene_0034" "Gene_0035" "Gene_0036"
#>   [37] "Gene_0037" "Gene_0038" "Gene_0039" "Gene_0040" "Gene_0041" "Gene_0042"
#>   [43] "Gene_0043" "Gene_0044" "Gene_0045" "Gene_0046" "Gene_0047" "Gene_0048"
#>   [49] "Gene_0049" "Gene_0050" "Gene_0051" "Gene_0052" "Gene_0053" "Gene_0054"
#>   [55] "Gene_0055" "Gene_0056" "Gene_0057" "Gene_0058" "Gene_0059" "Gene_0060"
#>   [61] "Gene_0061" "Gene_0062" "Gene_0063" "Gene_0064" "Gene_0065" "Gene_0066"
#>   [67] "Gene_0067" "Gene_0068" "Gene_0069" "Gene_0070" "Gene_0071" "Gene_0072"
#>   [73] "Gene_0073" "Gene_0074" "Gene_0075" "Gene_0076" "Gene_0077" "Gene_0078"
#>   [79] "Gene_0079" "Gene_0080" "Gene_0081" "Gene_0082" "Gene_0083" "Gene_0084"
#>   [85] "Gene_0085" "Gene_0086" "Gene_0087" "Gene_0088" "Gene_0089" "Gene_0090"
#>   [91] "Gene_0091" "Gene_0092" "Gene_0093" "Gene_0094" "Gene_0095" "Gene_0096"
#>   [97] "Gene_0097" "Gene_0098" "Gene_0099" "Gene_0100" "Gene_0101" "Gene_0102"
#>  [103] "Gene_0103" "Gene_0104" "Gene_0105" "Gene_0106" "Gene_0107" "Gene_0108"
#>  [109] "Gene_0109" "Gene_0110" "Gene_0111" "Gene_0112" "Gene_0113" "Gene_0114"
#>  [115] "Gene_0115" "Gene_0116" "Gene_0117" "Gene_0118" "Gene_0119" "Gene_0120"
#>  [121] "Gene_0121" "Gene_0122" "Gene_0123" "Gene_0124" "Gene_0125" "Gene_0126"
#>  [127] "Gene_0127" "Gene_0128" "Gene_0129" "Gene_0130" "Gene_0131" "Gene_0132"
#>  [133] "Gene_0133" "Gene_0134" "Gene_0135" "Gene_0136" "Gene_0137" "Gene_0138"
#>  [139] "Gene_0139" "Gene_0140" "Gene_0141" "Gene_0142" "Gene_0143" "Gene_0144"
#>  [145] "Gene_0145" "Gene_0146" "Gene_0147" "Gene_0148" "Gene_0149" "Gene_0150"
#>  [151] "Gene_0151" "Gene_0152" "Gene_0153" "Gene_0154" "Gene_0155" "Gene_0156"
#>  [157] "Gene_0157" "Gene_0158" "Gene_0159" "Gene_0160" "Gene_0161" "Gene_0162"
#>  [163] "Gene_0163" "Gene_0164" "Gene_0165" "Gene_0166" "Gene_0167" "Gene_0168"
#>  [169] "Gene_0169" "Gene_0170" "Gene_0171" "Gene_0172" "Gene_0173" "Gene_0174"
#>  [175] "Gene_0175" "Gene_0176" "Gene_0177" "Gene_0178" "Gene_0179" "Gene_0180"
#>  [181] "Gene_0181" "Gene_0182" "Gene_0183" "Gene_0184" "Gene_0185" "Gene_0186"
#>  [187] "Gene_0187" "Gene_0188" "Gene_0189" "Gene_0190" "Gene_0191" "Gene_0192"
#>  [193] "Gene_0193" "Gene_0194" "Gene_0195" "Gene_0196" "Gene_0197" "Gene_0198"
#>  [199] "Gene_0199" "Gene_0200" "Gene_0201" "Gene_0202" "Gene_0203" "Gene_0204"
#>  [205] "Gene_0205" "Gene_0206" "Gene_0207" "Gene_0208" "Gene_0209" "Gene_0210"
#>  [211] "Gene_0211" "Gene_0212" "Gene_0213" "Gene_0214" "Gene_0215" "Gene_0216"
#>  [217] "Gene_0217" "Gene_0218" "Gene_0219" "Gene_0220" "Gene_0221" "Gene_0222"
#>  [223] "Gene_0223" "Gene_0224" "Gene_0225" "Gene_0226" "Gene_0227" "Gene_0228"
#>  [229] "Gene_0229" "Gene_0230" "Gene_0231" "Gene_0232" "Gene_0233" "Gene_0234"
#>  [235] "Gene_0235" "Gene_0236" "Gene_0237" "Gene_0238" "Gene_0239" "Gene_0240"
#>  [241] "Gene_0241" "Gene_0242" "Gene_0243" "Gene_0244" "Gene_0245" "Gene_0246"
#>  [247] "Gene_0247" "Gene_0248" "Gene_0249" "Gene_0250" "Gene_0251" "Gene_0252"
#>  [253] "Gene_0253" "Gene_0254" "Gene_0255" "Gene_0256" "Gene_0257" "Gene_0258"
#>  [259] "Gene_0259" "Gene_0260" "Gene_0261" "Gene_0262" "Gene_0263" "Gene_0264"
#>  [265] "Gene_0265" "Gene_0266" "Gene_0267" "Gene_0268" "Gene_0269" "Gene_0270"
#>  [271] "Gene_0271" "Gene_0272" "Gene_0273" "Gene_0274" "Gene_0275" "Gene_0276"
#>  [277] "Gene_0277" "Gene_0278" "Gene_0279" "Gene_0280" "Gene_0281" "Gene_0282"
#>  [283] "Gene_0283" "Gene_0284" "Gene_0285" "Gene_0286" "Gene_0287" "Gene_0288"
#>  [289] "Gene_0289" "Gene_0290" "Gene_0291" "Gene_0292" "Gene_0293" "Gene_0294"
#>  [295] "Gene_0295" "Gene_0296" "Gene_0297" "Gene_0298" "Gene_0299" "Gene_0300"
#>  [301] "Gene_0301" "Gene_0302" "Gene_0303" "Gene_0304" "Gene_0305" "Gene_0306"
#>  [307] "Gene_0307" "Gene_0308" "Gene_0309" "Gene_0310" "Gene_0311" "Gene_0312"
#>  [313] "Gene_0313" "Gene_0314" "Gene_0315" "Gene_0316" "Gene_0317" "Gene_0318"
#>  [319] "Gene_0319" "Gene_0320" "Gene_0321" "Gene_0322" "Gene_0323" "Gene_0324"
#>  [325] "Gene_0325" "Gene_0326" "Gene_0327" "Gene_0328" "Gene_0329" "Gene_0330"
#>  [331] "Gene_0331" "Gene_0332" "Gene_0333" "Gene_0334" "Gene_0335" "Gene_0336"
#>  [337] "Gene_0337" "Gene_0338" "Gene_0339" "Gene_0340" "Gene_0341" "Gene_0342"
#>  [343] "Gene_0343" "Gene_0344" "Gene_0345" "Gene_0346" "Gene_0347" "Gene_0348"
#>  [349] "Gene_0349" "Gene_0350" "Gene_0351" "Gene_0352" "Gene_0353" "Gene_0354"
#>  [355] "Gene_0355" "Gene_0356" "Gene_0357" "Gene_0358" "Gene_0359" "Gene_0360"
#>  [361] "Gene_0361" "Gene_0362" "Gene_0363" "Gene_0364" "Gene_0365" "Gene_0366"
#>  [367] "Gene_0367" "Gene_0368" "Gene_0369" "Gene_0370" "Gene_0371" "Gene_0372"
#>  [373] "Gene_0373" "Gene_0374" "Gene_0375" "Gene_0376" "Gene_0377" "Gene_0378"
#>  [379] "Gene_0379" "Gene_0380" "Gene_0381" "Gene_0382" "Gene_0383" "Gene_0384"
#>  [385] "Gene_0385" "Gene_0386" "Gene_0387" "Gene_0388" "Gene_0389" "Gene_0390"
#>  [391] "Gene_0391" "Gene_0392" "Gene_0393" "Gene_0394" "Gene_0395" "Gene_0396"
#>  [397] "Gene_0397" "Gene_0398" "Gene_0399" "Gene_0400" "Gene_0401" "Gene_0402"
#>  [403] "Gene_0403" "Gene_0404" "Gene_0405" "Gene_0406" "Gene_0407" "Gene_0408"
#>  [409] "Gene_0409" "Gene_0410" "Gene_0411" "Gene_0412" "Gene_0413" "Gene_0414"
#>  [415] "Gene_0415" "Gene_0416" "Gene_0417" "Gene_0418" "Gene_0419" "Gene_0420"
#>  [421] "Gene_0421" "Gene_0422" "Gene_0423" "Gene_0424" "Gene_0425" "Gene_0426"
#>  [427] "Gene_0427" "Gene_0428" "Gene_0429" "Gene_0430" "Gene_0431" "Gene_0432"
#>  [433] "Gene_0433" "Gene_0434" "Gene_0435" "Gene_0436" "Gene_0437" "Gene_0438"
#>  [439] "Gene_0439" "Gene_0440" "Gene_0441" "Gene_0442" "Gene_0443" "Gene_0444"
#>  [445] "Gene_0445" "Gene_0446" "Gene_0447" "Gene_0448" "Gene_0449" "Gene_0450"
#>  [451] "Gene_0451" "Gene_0452" "Gene_0453" "Gene_0454" "Gene_0455" "Gene_0456"
#>  [457] "Gene_0457" "Gene_0458" "Gene_0459" "Gene_0460" "Gene_0461" "Gene_0462"
#>  [463] "Gene_0463" "Gene_0464" "Gene_0465" "Gene_0466" "Gene_0467" "Gene_0468"
#>  [469] "Gene_0469" "Gene_0470" "Gene_0471" "Gene_0472" "Gene_0473" "Gene_0474"
#>  [475] "Gene_0475" "Gene_0476" "Gene_0477" "Gene_0478" "Gene_0479" "Gene_0480"
#>  [481] "Gene_0481" "Gene_0482" "Gene_0483" "Gene_0484" "Gene_0485" "Gene_0486"
#>  [487] "Gene_0487" "Gene_0488" "Gene_0489" "Gene_0490" "Gene_0491" "Gene_0492"
#>  [493] "Gene_0493" "Gene_0494" "Gene_0495" "Gene_0496" "Gene_0497" "Gene_0498"
#>  [499] "Gene_0499" "Gene_0500" "Gene_0501" "Gene_0502" "Gene_0503" "Gene_0504"
#>  [505] "Gene_0505" "Gene_0506" "Gene_0507" "Gene_0508" "Gene_0509" "Gene_0510"
#>  [511] "Gene_0511" "Gene_0512" "Gene_0513" "Gene_0514" "Gene_0515" "Gene_0516"
#>  [517] "Gene_0517" "Gene_0518" "Gene_0519" "Gene_0520" "Gene_0521" "Gene_0522"
#>  [523] "Gene_0523" "Gene_0524" "Gene_0525" "Gene_0526" "Gene_0527" "Gene_0528"
#>  [529] "Gene_0529" "Gene_0530" "Gene_0531" "Gene_0532" "Gene_0533" "Gene_0534"
#>  [535] "Gene_0535" "Gene_0536" "Gene_0537" "Gene_0538" "Gene_0539" "Gene_0540"
#>  [541] "Gene_0541" "Gene_0542" "Gene_0543" "Gene_0544" "Gene_0545" "Gene_0546"
#>  [547] "Gene_0547" "Gene_0548" "Gene_0549" "Gene_0550" "Gene_0551" "Gene_0552"
#>  [553] "Gene_0553" "Gene_0554" "Gene_0555" "Gene_0556" "Gene_0557" "Gene_0558"
#>  [559] "Gene_0559" "Gene_0560" "Gene_0561" "Gene_0562" "Gene_0563" "Gene_0564"
#>  [565] "Gene_0565" "Gene_0566" "Gene_0567" "Gene_0568" "Gene_0569" "Gene_0570"
#>  [571] "Gene_0571" "Gene_0572" "Gene_0573" "Gene_0574" "Gene_0575" "Gene_0576"
#>  [577] "Gene_0577" "Gene_0578" "Gene_0579" "Gene_0580" "Gene_0581" "Gene_0582"
#>  [583] "Gene_0583" "Gene_0584" "Gene_0585" "Gene_0586" "Gene_0587" "Gene_0588"
#>  [589] "Gene_0589" "Gene_0590" "Gene_0591" "Gene_0592" "Gene_0593" "Gene_0594"
#>  [595] "Gene_0595" "Gene_0596" "Gene_0597" "Gene_0598" "Gene_0599" "Gene_0600"
#>  [601] "Gene_0601" "Gene_0602" "Gene_0603" "Gene_0604" "Gene_0605" "Gene_0606"
#>  [607] "Gene_0607" "Gene_0608" "Gene_0609" "Gene_0610" "Gene_0611" "Gene_0612"
#>  [613] "Gene_0613" "Gene_0614" "Gene_0615" "Gene_0616" "Gene_0617" "Gene_0618"
#>  [619] "Gene_0619" "Gene_0620" "Gene_0621" "Gene_0622" "Gene_0623" "Gene_0624"
#>  [625] "Gene_0625" "Gene_0626" "Gene_0627" "Gene_0628" "Gene_0629" "Gene_0630"
#>  [631] "Gene_0631" "Gene_0632" "Gene_0633" "Gene_0634" "Gene_0635" "Gene_0636"
#>  [637] "Gene_0637" "Gene_0638" "Gene_0639" "Gene_0640" "Gene_0641" "Gene_0642"
#>  [643] "Gene_0643" "Gene_0644" "Gene_0645" "Gene_0646" "Gene_0647" "Gene_0648"
#>  [649] "Gene_0649" "Gene_0650" "Gene_0651" "Gene_0652" "Gene_0653" "Gene_0654"
#>  [655] "Gene_0655" "Gene_0656" "Gene_0657" "Gene_0658" "Gene_0659" "Gene_0660"
#>  [661] "Gene_0661" "Gene_0662" "Gene_0663" "Gene_0664" "Gene_0665" "Gene_0666"
#>  [667] "Gene_0667" "Gene_0668" "Gene_0669" "Gene_0670" "Gene_0671" "Gene_0672"
#>  [673] "Gene_0673" "Gene_0674" "Gene_0675" "Gene_0676" "Gene_0677" "Gene_0678"
#>  [679] "Gene_0679" "Gene_0680" "Gene_0681" "Gene_0682" "Gene_0683" "Gene_0684"
#>  [685] "Gene_0685" "Gene_0686" "Gene_0687" "Gene_0688" "Gene_0689" "Gene_0690"
#>  [691] "Gene_0691" "Gene_0692" "Gene_0693" "Gene_0694" "Gene_0695" "Gene_0696"
#>  [697] "Gene_0697" "Gene_0698" "Gene_0699" "Gene_0700" "Gene_0701" "Gene_0702"
#>  [703] "Gene_0703" "Gene_0704" "Gene_0705" "Gene_0706" "Gene_0707" "Gene_0708"
#>  [709] "Gene_0709" "Gene_0710" "Gene_0711" "Gene_0712" "Gene_0713" "Gene_0714"
#>  [715] "Gene_0715" "Gene_0716" "Gene_0717" "Gene_0718" "Gene_0719" "Gene_0720"
#>  [721] "Gene_0721" "Gene_0722" "Gene_0723" "Gene_0724" "Gene_0725" "Gene_0726"
#>  [727] "Gene_0727" "Gene_0728" "Gene_0729" "Gene_0730" "Gene_0731" "Gene_0732"
#>  [733] "Gene_0733" "Gene_0734" "Gene_0735" "Gene_0736" "Gene_0737" "Gene_0738"
#>  [739] "Gene_0739" "Gene_0740" "Gene_0741" "Gene_0742" "Gene_0743" "Gene_0744"
#>  [745] "Gene_0745" "Gene_0746" "Gene_0747" "Gene_0748" "Gene_0749" "Gene_0750"
#>  [751] "Gene_0751" "Gene_0752" "Gene_0753" "Gene_0754" "Gene_0755" "Gene_0756"
#>  [757] "Gene_0757" "Gene_0758" "Gene_0759" "Gene_0760" "Gene_0761" "Gene_0762"
#>  [763] "Gene_0763" "Gene_0764" "Gene_0765" "Gene_0766" "Gene_0767" "Gene_0768"
#>  [769] "Gene_0769" "Gene_0770" "Gene_0771" "Gene_0772" "Gene_0773" "Gene_0774"
#>  [775] "Gene_0775" "Gene_0776" "Gene_0777" "Gene_0778" "Gene_0779" "Gene_0780"
#>  [781] "Gene_0781" "Gene_0782" "Gene_0783" "Gene_0784" "Gene_0785" "Gene_0786"
#>  [787] "Gene_0787" "Gene_0788" "Gene_0789" "Gene_0790" "Gene_0791" "Gene_0792"
#>  [793] "Gene_0793" "Gene_0794" "Gene_0795" "Gene_0796" "Gene_0797" "Gene_0798"
#>  [799] "Gene_0799" "Gene_0800" "Gene_0801" "Gene_0802" "Gene_0803" "Gene_0804"
#>  [805] "Gene_0805" "Gene_0806" "Gene_0807" "Gene_0808" "Gene_0809" "Gene_0810"
#>  [811] "Gene_0811" "Gene_0812" "Gene_0813" "Gene_0814" "Gene_0815" "Gene_0816"
#>  [817] "Gene_0817" "Gene_0818" "Gene_0819" "Gene_0820" "Gene_0821" "Gene_0822"
#>  [823] "Gene_0823" "Gene_0824" "Gene_0825" "Gene_0826" "Gene_0827" "Gene_0828"
#>  [829] "Gene_0829" "Gene_0830" "Gene_0831" "Gene_0832" "Gene_0833" "Gene_0834"
#>  [835] "Gene_0835" "Gene_0836" "Gene_0837" "Gene_0838" "Gene_0839" "Gene_0840"
#>  [841] "Gene_0841" "Gene_0842" "Gene_0843" "Gene_0844" "Gene_0845" "Gene_0846"
#>  [847] "Gene_0847" "Gene_0848" "Gene_0849" "Gene_0850" "Gene_0851" "Gene_0852"
#>  [853] "Gene_0853" "Gene_0854" "Gene_0855" "Gene_0856" "Gene_0857" "Gene_0858"
#>  [859] "Gene_0859" "Gene_0860" "Gene_0861" "Gene_0862" "Gene_0863" "Gene_0864"
#>  [865] "Gene_0865" "Gene_0866" "Gene_0867" "Gene_0868" "Gene_0869" "Gene_0870"
#>  [871] "Gene_0871" "Gene_0872" "Gene_0873" "Gene_0874" "Gene_0875" "Gene_0876"
#>  [877] "Gene_0877" "Gene_0878" "Gene_0879" "Gene_0880" "Gene_0881" "Gene_0882"
#>  [883] "Gene_0883" "Gene_0884" "Gene_0885" "Gene_0886" "Gene_0887" "Gene_0888"
#>  [889] "Gene_0889" "Gene_0890" "Gene_0891" "Gene_0892" "Gene_0893" "Gene_0894"
#>  [895] "Gene_0895" "Gene_0896" "Gene_0897" "Gene_0898" "Gene_0899" "Gene_0900"
#>  [901] "Gene_0901" "Gene_0902" "Gene_0903" "Gene_0904" "Gene_0905" "Gene_0906"
#>  [907] "Gene_0907" "Gene_0908" "Gene_0909" "Gene_0910" "Gene_0911" "Gene_0912"
#>  [913] "Gene_0913" "Gene_0914" "Gene_0915" "Gene_0916" "Gene_0917" "Gene_0918"
#>  [919] "Gene_0919" "Gene_0920" "Gene_0921" "Gene_0922" "Gene_0923" "Gene_0924"
#>  [925] "Gene_0925" "Gene_0926" "Gene_0927" "Gene_0928" "Gene_0929" "Gene_0930"
#>  [931] "Gene_0931" "Gene_0932" "Gene_0933" "Gene_0934" "Gene_0935" "Gene_0936"
#>  [937] "Gene_0937" "Gene_0938" "Gene_0939" "Gene_0940" "Gene_0941" "Gene_0942"
#>  [943] "Gene_0943" "Gene_0944" "Gene_0945" "Gene_0946" "Gene_0947" "Gene_0948"
#>  [949] "Gene_0949" "Gene_0950" "Gene_0951" "Gene_0952" "Gene_0953" "Gene_0954"
#>  [955] "Gene_0955" "Gene_0956" "Gene_0957" "Gene_0958" "Gene_0959" "Gene_0960"
#>  [961] "Gene_0961" "Gene_0962" "Gene_0963" "Gene_0964" "Gene_0965" "Gene_0966"
#>  [967] "Gene_0967" "Gene_0968" "Gene_0969" "Gene_0970" "Gene_0971" "Gene_0972"
#>  [973] "Gene_0973" "Gene_0974" "Gene_0975" "Gene_0976" "Gene_0977" "Gene_0978"
#>  [979] "Gene_0979" "Gene_0980" "Gene_0981" "Gene_0982" "Gene_0983" "Gene_0984"
#>  [985] "Gene_0985" "Gene_0986" "Gene_0987" "Gene_0988" "Gene_0989" "Gene_0990"
#>  [991] "Gene_0991" "Gene_0992" "Gene_0993" "Gene_0994" "Gene_0995" "Gene_0996"
#>  [997] "Gene_0997" "Gene_0998" "Gene_0999" "Gene_1000"