Integrate multiple objects and save to file
Usage
integration_workflow(
batches,
excluded_cells = NULL,
resolution = seq(0.2, 1, by = 0.2),
experiment_name = "default_experiment",
organism = "human",
...
)Arguments
- batches
objects for all batches provided as a list. If named, the resulting integrated object will be identified with corresponding values in 'batch' metadata
- excluded_cells
named list of cells to exclude
- resolution
value(s) to control the clustering resolution via
scran::findMarkers- experiment_name
arbitrary name to identify experiment
- organism
either "human" or "mouse"
- ...
extra args passed to sce_integrate