Record Experiment Metadata

Records miscellaneous data

Usage

record_experiment_data(
  object,
  experiment_name = "default_experiment",
  organism = "human"
)

Arguments

object

A object

experiment_name

name of the experiment

organism

human or mouse

Value

a SingleCellExperiment object

Examples

data(small_example_dataset)
record_experiment_data(small_example_dataset)
#> [17:22:00 
#> Logging Technical Details...
#> class: SingleCellExperiment 
#> dim: 1000 200 
#> metadata(2): markers experiment
#> assays(2): counts logcounts
#> rownames(1000): Gene_0001 Gene_0002 ... Gene_0999 Gene_1000
#> rowData names(0):
#> colnames(200): Cell_001 Cell_002 ... Cell_199 Cell_200
#> colData names(9): Mutation_Status Cell_Cycle ... gene_snn_res.0.8
#>   gene_snn_res.1
#> reducedDimNames(3): PCA TSNE UMAP
#> mainExpName: gene
#> altExpNames(1): Spikes