This function takes a SCE object and performs the below steps
split by batch
integrate
run integration pipeline and save
Usage
reintegrate_sce(object, suffix = "", reduction = "PCA", ...)
Arguments
- object
A SingleCellExperiment objects
- suffix
to be appended to file saved in output dir
- reduction
to use default is pca
- ...
extra args passed to sce_integrate
Value
a SingleCellExperiment object