Performs standard pre-processing workflow for scRNA-seq data
Usage
sce_preprocess(
object,
scale = TRUE,
normalize = TRUE,
features = NULL,
legacy_settings = FALSE,
...
)
Arguments
- object
Assay to use
- scale
Perform linear transformation 'Scaling'
- normalize
Perform normalization
- features
Identify highly variable features
- legacy_settings
Use legacy settings
- ...
extra args passed to scaling functions
Value
a preprocessed SingleCellExperiment object