Run PCA, TSNE and UMAP on a singlecell objects
perplexity should not be bigger than 3 * perplexity < nrow(X) - 1,
see details for interpretation
Usage
sce_reduce_dimensions(object, experiment = "gene", ...)
Arguments
- object
A SingleCellExperiment object
- experiment
Experiment of interest to be processed
- ...
Extra parameters passed to sce_reduce_dimensions
Value
a SingleCellExperiment object with embeddings