Create a seurat app on a shinyproxy docker instance

Source: R/docker_app.R

Create a seurat app on a shinyproxy docker instance

dockerSeuratApp(
  object = panc8,
  loom_path = NULL,
  appTitle = NULL,
  organism_type = "human",
  futureMb = 13000,
  bigwig_db = "~/.cache/seuratTools/bw-files.db"
)

Arguments

object

a seurat object

loom_path

path to a loom file

futureMb

#' @param bigwigb path to sqlite database listing bigwig files for cells in the seurat object

Examples

if (FALSE) {
dockerSeuratApp(panc8)
}