Plot BigWig Coverage for Genes of Interest by a Given Variable — plot_gene_coverage_by

Plot BigWig coverage for genes of interest colored by a given variable

plot_gene_coverage_by_var(
  genes_of_interest = "RXRG",
  cell_metadata,
  bigwig_tbl,
  var_of_interest = "batch",
  values_of_interest = NULL,
  organism = "human",
  edb = NULL,
  heights = c(3, 1),
  scale_y = "log10",
  reverse_x = FALSE,
  start = NULL,
  end = NULL,
  summarize_transcripts = FALSE,
  ...
)

Arguments

genes_of_interest: Gene of interest
cell_metadata: a dataframe with cell metadata from seurat
bigwig_tbl: a tibble with colnames "name", "bigWig", and "sample_id" matching the filename, absolute path, and sample name of each cell in the cell_metadata
var_of_interest: Variable to color by
organism: Organism
edb: ensembldb object
heights: The heights of each row in the grid of plot
...