Preprocess Seurat Object

Performs standard pre-processing workflow for scRNA-seq data

seurat_preprocess(
  assay,
  scale = TRUE,
  normalize = TRUE,
  features = NULL,
  legacy_settings = FALSE,
  ...
)

Arguments

assay

Assay to use

scale

Perform linear transformation 'Scaling'

normalize

Perform normalization

features

Identify highly variable features

legacy_settings

Use legacy settings

...

Examples

panc8[["gene"]] <- seurat_preprocess(panc8[["gene"]])
#> Centering and scaling data matrix