Stash Marker Genes in a Seurat Object

Source: R/seurat_cluster.R

Marker Genes will be stored in slot @misc$markers

stash_marker_features(
  metavar,
  seu,
  seurat_assay,
  top_n = 200,
  p_val_cutoff = 0.5
)

Arguments

metavar

A metadata variable to group by

seu

A seurat object

seurat_assay

An assay to use

top_n

Use top n genes, Default "200"

p_val_cutoff

p value cut-off, Default value is "0.5"

Examples


seu <- stash_marker_features(metavar = "batch", seu, seurat_assay = "gene")
#> Error in stash_marker_features(metavar = "batch", seu, seurat_assay = "gene"): could not find function "stash_marker_features"